Package: proteoDeconv 0.1.0.9000

Måns Zamore

proteoDeconv: Enabling Cell-Type Deconvolution of Proteomics Data

Tools for deconvoluting proteomics data to identify and quantify cell types (e.g., immune cell types) in complex biological samples.

Authors:Måns Zamore [aut, cre]

proteoDeconv_0.1.0.9000.tar.gz
proteoDeconv_0.1.0.9000.zip(r-4.5)proteoDeconv_0.1.0.9000.zip(r-4.4)proteoDeconv_0.1.0.9000.zip(r-4.3)
proteoDeconv_0.1.0.9000.tgz(r-4.5-any)proteoDeconv_0.1.0.9000.tgz(r-4.4-any)proteoDeconv_0.1.0.9000.tgz(r-4.3-any)
proteoDeconv_0.1.0.9000.tar.gz(r-4.5-noble)proteoDeconv_0.1.0.9000.tar.gz(r-4.4-noble)
proteoDeconv_0.1.0.9000.tgz(r-4.4-emscripten)proteoDeconv_0.1.0.9000.tgz(r-4.3-emscripten)
proteoDeconv.pdf |proteoDeconv.html✨
proteoDeconv/json (API)

# Install 'proteoDeconv' in R:
install.packages('proteoDeconv', repos = c('https://computationalproteomics.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/computationalproteomics/proteodeconv/issues

Pkgdown site:https://computationalproteomics.github.io

On CRAN:

Conda:

3.85 score 2 stars 16 exports 122 dependencies

Last updated 13 hours agofrom:bf2bb15676. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 14 2025
R-4.5-winNOTEMar 14 2025
R-4.5-macNOTEMar 14 2025
R-4.5-linuxNOTEMar 14 2025
R-4.4-winNOTEMar 14 2025
R-4.4-macNOTEMar 14 2025
R-4.4-linuxNOTEMar 14 2025
R-4.3-winNOTEMar 14 2025
R-4.3-macNOTEMar 14 2025

Exports:convert_to_tpmcreate_phenoclassescreate_signature_matrixdeconvolutedeconvolute_bayesdebulkdeconvolute_cibersortdeconvolute_cibersortxdeconvolute_epicextract_identifiershandle_duplicateshandle_missing_valueshandle_scalingmap_cell_groupssimulate_dataunlog2_dataupdate_gene_symbols

Dependencies:abindade4apeaskpassbasiliskbasilisk.utilsBHBiobaseBiocGenericsBiocParallelbiomformatBiostringsbitbit64bitopsclicliprclueclustercodetoolscolorspacecpp11crayoncurldata.tableDelayedArraydigestdir.expirydplyrfansifarverfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehereHGNChelperhmshttrigraphimputeIRangesisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimeMsCoreUtilsmulttestmunsellnlmeopensslpermutephyloseqpillarpixmappkgconfigplyrpngprettyunitsprogressproxyCpurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppTOMLRCurlreadrreshape2reticulaterhdf5rhdf5filtersRhdf5librlangrprojrootS4ArraysS4VectorsscalesSimBusnowspSparseArraysparseMatrixStatssplitstackshapestringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8uuidvctrsveganviridisLitevroomwithrXVector

Introduction to proteoDeconv

Rendered fromproteoDeconv.Rmdusingknitr::rmarkdownon Mar 14 2025.

Last update: 2025-03-07
Started: 2025-03-06