Package: proteoDeconv 0.1.0.9000
proteoDeconv: Enabling Cell-Type Deconvolution of Proteomics Data
Tools for deconvoluting proteomics data to identify and quantify cell types (e.g., immune cell types) in complex biological samples.
Authors:
proteoDeconv_0.1.0.9000.tar.gz
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proteoDeconv.pdf |proteoDeconv.html✨
proteoDeconv/json (API)
# Install 'proteoDeconv' in R: |
install.packages('proteoDeconv', repos = c('https://computationalproteomics.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/computationalproteomics/proteodeconv/issues
Pkgdown site:https://computationalproteomics.github.io
Last updated 13 hours agofrom:bf2bb15676. Checks:1 OK, 8 NOTE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 14 2025 |
R-4.5-win | NOTE | Mar 14 2025 |
R-4.5-mac | NOTE | Mar 14 2025 |
R-4.5-linux | NOTE | Mar 14 2025 |
R-4.4-win | NOTE | Mar 14 2025 |
R-4.4-mac | NOTE | Mar 14 2025 |
R-4.4-linux | NOTE | Mar 14 2025 |
R-4.3-win | NOTE | Mar 14 2025 |
R-4.3-mac | NOTE | Mar 14 2025 |
Exports:convert_to_tpmcreate_phenoclassescreate_signature_matrixdeconvolutedeconvolute_bayesdebulkdeconvolute_cibersortdeconvolute_cibersortxdeconvolute_epicextract_identifiershandle_duplicateshandle_missing_valueshandle_scalingmap_cell_groupssimulate_dataunlog2_dataupdate_gene_symbols
Dependencies:abindade4apeaskpassbasiliskbasilisk.utilsBHBiobaseBiocGenericsBiocParallelbiomformatBiostringsbitbit64bitopsclicliprclueclustercodetoolscolorspacecpp11crayoncurldata.tableDelayedArraydigestdir.expirydplyrfansifarverfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehereHGNChelperhmshttrigraphimputeIRangesisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimeMsCoreUtilsmulttestmunsellnlmeopensslpermutephyloseqpillarpixmappkgconfigplyrpngprettyunitsprogressproxyCpurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppTOMLRCurlreadrreshape2reticulaterhdf5rhdf5filtersRhdf5librlangrprojrootS4ArraysS4VectorsscalesSimBusnowspSparseArraysparseMatrixStatssplitstackshapestringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8uuidvctrsveganviridisLitevroomwithrXVector